Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G051043 GRMZM2G051043 |
3 | 4160388 | 4163828 | Phytozome | 6a | Zea_mays | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G051043_T02 GRMZM2G051043_T02 PAC:31031418 |
Low | No | 616 | Get ORF Coding potential... Type: noncoding Potential: -1.239 Folding energies... MFEI: -28.442 AMFE: -0.628 GC content %: 45.292 | |
Zmays_GRMZM2G051043_T03 GRMZM2G051043_T03 PAC:31031417 |
High | No | 419 | Get ORF Coding potential... Type: noncoding Potential: -1.298 Folding energies... MFEI: -23.580 AMFE: -0.540 GC content %: 43.675 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G051043_T02 | SwissProt | 2015-06-01 | Q9LPI5 | 8.0e-9 |