GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM2G072219 GRMZM2G072219	2	220528665	220529277	Phytozome	6a	Zea_mays	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM2G072219_T01 GRMZM2G072219_T01 PAC:30968010	High	No	517		Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -25.261 AMFE: -0.531 GC content %: 47.582
Zmays_GRMZM2G072219_T02 GRMZM2G072219_T02 PAC:30968009	High	No	515		Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -25.049 AMFE: -0.524 GC content %: 47.767

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).