Gene
Zmays GRMZM2G073192
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Zmays_GRMZM2G073192 GRMZM2G073192 |
1 | 245649513 | 245650551 | Phytozome | 6a | Zea_mays | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Zmays_GRMZM2G073192_T01 GRMZM2G073192_T01 PAC:31015493 |
High | No | 1000 | Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -32.820 AMFE: -0.656 GC content %: 50.000 | |
| Zmays_GRMZM2G073192_T02 GRMZM2G073192_T02 PAC:31015492 |
High | No | 1024 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -31.738 AMFE: -0.631 GC content %: 50.293 | |
| Zmays_GRMZM2G073192_T03 GRMZM2G073192_T03 PAC:31015491 |
High | No | 1004 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -32.052 AMFE: -0.638 GC content %: 50.199 | |
| Zmays_GRMZM2G073192_T04 GRMZM2G073192_T04 PAC:31015490 |
High | No | 1010 | Get ORF Coding potential... Type: noncoding Potential: -0.808 Folding energies... MFEI: -32.574 AMFE: -0.648 GC content %: 50.297 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
