Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G082160 GRMZM2G082160 |
5 | 22593614 | 22594014 | Phytozome | 6a | Zea_mays | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G082160_T01 GRMZM2G082160_T01 PAC:30983545 |
Low | No | 401 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -21.920 AMFE: -0.543 GC content %: 40.399 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G082160_T01 | SwissProt | 2015-06-01 | Q9FGS8 | 1.0e-6 |
Zmays_GRMZM2G082160_T01 | RepBase (RepeatMasker) | 2014-01-31 | Copia13-ZM_LTR |