Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G087714 GRMZM2G087714 |
3 | 1477248 | 1478960 | Phytozome | 6a | Zea_mays | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G087714_T01 GRMZM2G087714_T01 PAC:31033863 |
Low | No | 1599 | Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -26.098 AMFE: -0.603 GC content %: 43.277 | |
Zmays_GRMZM2G087714_T02 GRMZM2G087714_T02 PAC:31033864 |
Low | No | 1035 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -25.623 AMFE: -0.573 GC content %: 44.734 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G087714_T01 | SwissProt | 2015-06-01 | Q93ZJ3 | 4.0e-7 |
Zmays_GRMZM2G087714_T02 | SwissProt | 2015-06-01 | Q93ZJ3 | 7.0e-8 |