GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM2G106216 GRMZM2G106216	5	194308680	194315355	Phytozome	6a	Zea_mays	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM2G106216_T02 GRMZM2G106216_T02 PAC:30991418	High	No	730		Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -30.493 AMFE: -0.668 GC content %: 45.616
Zmays_GRMZM2G106216_T07 GRMZM2G106216_T07 PAC:30991417	High	No	575		Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -28.226 AMFE: -0.536 GC content %: 52.696

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).