GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM2G106819 GRMZM2G106819	8	124326719	124327641	Phytozome	6a	Zea_mays	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM2G106819_T02 GRMZM2G106819_T02 PAC:30979747	High	No	874		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -40.698 AMFE: -0.665 GC content %: 61.213
Zmays_GRMZM2G106819_T03 GRMZM2G106819_T03 PAC:30979746	High	No	739		Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -42.300 AMFE: -0.650 GC content %: 65.088

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).