Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G107417 GRMZM2G107417 |
3 | 187157672 | 187159758 | Phytozome | 6a | Zea_mays | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G107417_T01 GRMZM2G107417_T01 PAC:31027513 |
Low | Yes | 1329 | Get ORF Coding potential... Type: noncoding Potential: -0.513 Folding energies... MFEI: -35.658 AMFE: -0.659 GC content %: 54.101 | |
Zmays_GRMZM2G107417_T02 GRMZM2G107417_T02 PAC:31027514 |
High | No | 874 | Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -28.284 AMFE: -0.651 GC content %: 43.478 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G107417_T01 | RepBase (RepeatMasker) | 2014-01-31 | Copia-38-LTR_ZM |