Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G107689 GRMZM2G107689 |
1 | 280559358 | 280566360 | Phytozome | 6a | Zea_mays | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G107689_T03 GRMZM2G107689_T03 PAC:31009305 |
Low | No | 511 | Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -26.771 AMFE: -0.608 GC content %: 44.031 | |
Zmays_GRMZM2G107689_T04 GRMZM2G107689_T04 PAC:31009304 |
Low | No | 698 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -26.805 AMFE: -0.654 GC content %: 40.974 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G107689_T03 | SwissProt | 2015-06-01 | Q683C9 | 6.0e-9 |
Zmays_GRMZM2G107689_T04 | SwissProt | 2015-06-01 | O64629 | 8.0e-8 |
Zmays_GRMZM2G107689_T03 | RepBase (RepeatMasker) | 2014-01-31 | SINE2-1a_SBi |