GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM2G111482 GRMZM2G111482	10	125857584	125862236	Phytozome	6a	Zea_mays	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM2G111482_T01 GRMZM2G111482_T01 PAC:31001256	High	No	1600		Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -27.688 AMFE: -0.712 GC content %: 38.875
Zmays_GRMZM2G111482_T02 GRMZM2G111482_T02 PAC:31001255	High	No	596		Get ORF Coding potential... Type: noncoding Potential: -1.310 Folding energies... MFEI: -30.403 AMFE: -0.606 GC content %: 50.168
Zmays_GRMZM2G111482_T03 GRMZM2G111482_T03 PAC:31001257	High	No	1004		Get ORF Coding potential... Type: noncoding Potential: -1.250 Folding energies... MFEI: -29.223 AMFE: -0.741 GC content %: 39.442

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).