Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G114356 GRMZM2G114356 |
1 | 120006340 | 120007832 | Phytozome | 6a | Zea_mays | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G114356_T02 GRMZM2G114356_T02 PAC:31017216 |
Low | Yes | 1493 | Get ORF Coding potential... Type: noncoding Potential: -0.720 Folding energies... MFEI: -32.659 AMFE: -0.627 GC content %: 52.110 | |
Zmays_GRMZM2G114356_T03 GRMZM2G114356_T03 PAC:31017215 |
High | No | 758 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -27.678 AMFE: -0.581 GC content %: 47.625 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G114356_T02 | SwissProt | 2015-06-01 | Q9T0I5 | 6.0e-5 |