GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM2G114741 GRMZM2G114741	6	103670004	103672413	Phytozome	6a	Zea_mays	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM2G114741_T01 GRMZM2G114741_T01 PAC:31023323	High	No	570		Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -23.895 AMFE: -0.655 GC content %: 36.491
Zmays_GRMZM2G114741_T02 GRMZM2G114741_T02 PAC:31023322	High	No	531		Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -24.124 AMFE: -0.637 GC content %: 37.853
Zmays_GRMZM2G114741_T03 GRMZM2G114741_T03 PAC:31023321	High	No	568		Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -23.873 AMFE: -0.655 GC content %: 36.444
Zmays_GRMZM2G114741_T04 GRMZM2G114741_T04 PAC:31023320	High	No	1153		Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -22.923 AMFE: -0.666 GC content %: 34.432
Zmays_GRMZM2G114741_T05 GRMZM2G114741_T05 PAC:31023319	High	No	875		Get ORF Coding potential... Type: noncoding Potential: -0.781 Folding energies... MFEI: -23.120 AMFE: -0.636 GC content %: 36.343

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).