Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G119485 GRMZM2G119485 |
5 | 192114411 | 192116639 | Phytozome | 6a | Zea_mays | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G119485_T01 GRMZM2G119485_T01 PAC:30989919 |
High | No | 682 | Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -36.950 AMFE: -0.640 GC content %: 57.771 | |
Zmays_GRMZM2G119485_T02 GRMZM2G119485_T02 PAC:30989918 |
Low | Yes | 509 | Get ORF Coding potential... Type: noncoding Potential: -0.421 Folding energies... MFEI: -38.350 AMFE: -0.705 GC content %: 54.420 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G119485_T02 | RepBase (RepeatMasker) | 2014-01-31 | HARB-4A_SBi |