Gene
Zmays GRMZM2G122013
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Zmays_GRMZM2G122013 GRMZM2G122013 |
6 | 62759743 | 62762182 | Phytozome | 6a | Zea_mays | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Zmays_GRMZM2G122013_T01 GRMZM2G122013_T01 PAC:31020845 |
High | No | 876 | Get ORF Coding potential... Type: noncoding Potential: -1.325 Folding energies... MFEI: -28.664 AMFE: -0.591 GC content %: 48.516 | |
| Zmays_GRMZM2G122013_T02 GRMZM2G122013_T02 PAC:31020842 |
High | No | 1307 | Get ORF Coding potential... Type: noncoding Potential: -1.329 Folding energies... MFEI: -27.261 AMFE: -0.620 GC content %: 43.994 | |
| Zmays_GRMZM2G122013_T03 GRMZM2G122013_T03 PAC:31020841 |
High | No | 1062 | Get ORF Coding potential... Type: noncoding Potential: -1.332 Folding energies... MFEI: -27.910 AMFE: -0.609 GC content %: 45.857 | |
| Zmays_GRMZM2G122013_T04 GRMZM2G122013_T04 PAC:31020844 |
High | No | 419 | Get ORF Coding potential... Type: noncoding Potential: -1.333 Folding energies... MFEI: -28.138 AMFE: -0.584 GC content %: 48.210 | |
| Zmays_GRMZM2G122013_T05 GRMZM2G122013_T05 PAC:31020843 |
High | No | 842 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -26.829 AMFE: -0.642 GC content %: 41.805 | |
| Zmays_GRMZM2G122013_T06 GRMZM2G122013_T06 PAC:31020846 |
High | No | 812 | Get ORF Coding potential... Type: noncoding Potential: -1.298 Folding energies... MFEI: -25.874 AMFE: -0.715 GC content %: 36.207 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
