GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM2G124744 GRMZM2G124744	10	85325382	85326606	Phytozome	6a	Zea_mays	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM2G124744_T01 GRMZM2G124744_T01 PAC:31005207	High	No	1068		Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -25.131 AMFE: -0.589 GC content %: 42.697
Zmays_GRMZM2G124744_T02 GRMZM2G124744_T02 PAC:31005206	High	No	1096		Get ORF Coding potential... Type: noncoding Potential: -1.272 Folding energies... MFEI: -25.420 AMFE: -0.595 GC content %: 42.701
Zmays_GRMZM2G124744_T03 GRMZM2G124744_T03 PAC:31005205	High	No	1225		Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -25.020 AMFE: -0.597 GC content %: 41.878

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).