Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G131087 GRMZM2G131087 |
4 | 241391646 | 241395215 | Phytozome | 6a | Zea_mays | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G131087_T03 GRMZM2G131087_T03 PAC:31044937 |
Low | No | 1210 | Get ORF Coding potential... Type: noncoding Potential: -0.318 Folding energies... MFEI: -27.686 AMFE: -0.644 GC content %: 42.975 | |
Zmays_GRMZM2G131087_T05 GRMZM2G131087_T05 PAC:31044935 |
Low | No | 696 | Get ORF Coding potential... Type: noncoding Potential: -0.703 Folding energies... MFEI: -28.434 AMFE: -0.618 GC content %: 45.977 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G131087_T03 | SwissProt | 2015-06-01 | Q39129 | 2.0e-12 |
Zmays_GRMZM2G131087_T05 | SwissProt | 2015-06-01 | Q9FKW8 | 2.0e-13 |