Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G132019 GRMZM2G132019 |
1 | 7290520 | 7294785 | Phytozome | 6a | Zea_mays | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G132019_T01 GRMZM2G132019_T01 PAC:31013563 |
Low | No | 1061 | Get ORF Coding potential... Type: noncoding Potential: -0.764 Folding energies... MFEI: -27.144 AMFE: -0.613 GC content %: 44.298 | |
Zmays_GRMZM2G132019_T04 GRMZM2G132019_T04 PAC:31013562 |
Low | No | 665 | Get ORF Coding potential... Type: noncoding Potential: -0.370 Folding energies... MFEI: -30.331 AMFE: -0.609 GC content %: 49.774 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G132019_T01 | SwissProt | 2015-06-01 | Q94743 | 4.0e-10 |
Zmays_GRMZM2G132019_T04 | SwissProt | 2015-06-01 | Q94743 | 3.0e-13 |