GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM2G134951 GRMZM2G134951	2	33468171	33478528	Phytozome	6a	Zea_mays	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM2G134951_T01 GRMZM2G134951_T01 PAC:30968609	High	No	1223		Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -27.882 AMFE: -0.612 GC content %: 45.544
Zmays_GRMZM2G134951_T02 GRMZM2G134951_T02 PAC:30968610	High	No	1196		Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -28.002 AMFE: -0.609 GC content %: 45.987
Zmays_GRMZM2G134951_T03 GRMZM2G134951_T03 PAC:30968608	High	No	991		Get ORF Coding potential... Type: noncoding Potential: -0.574 Folding energies... MFEI: -29.344 AMFE: -0.606 GC content %: 48.436
Zmays_GRMZM2G134951_T06 GRMZM2G134951_T06 PAC:30968607	High	No	1593		Get ORF Coding potential... Type: noncoding Potential: -0.706 Folding energies... MFEI: -24.344 AMFE: -0.612 GC content %: 39.799
Zmays_GRMZM2G134951_T07 GRMZM2G134951_T07 PAC:30968611	High	No	818		Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -21.815 AMFE: -0.568 GC content %: 38.386

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).