Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G142013 GRMZM2G142013 |
7 | 145335573 | 145338652 | Phytozome | 6a | Zea_mays | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G142013_T01 GRMZM2G142013_T01 PAC:30994588 |
High | No | 820 | Get ORF Coding potential... Type: noncoding Potential: -1.008 Folding energies... MFEI: -31.256 AMFE: -0.606 GC content %: 51.585 | |
Zmays_GRMZM2G142013_T02 GRMZM2G142013_T02 PAC:30994587 |
High | No | 863 | Get ORF Coding potential... Type: noncoding Potential: -0.757 Folding energies... MFEI: -31.599 AMFE: -0.611 GC content %: 51.680 | |
Zmays_GRMZM2G142013_T03 GRMZM2G142013_T03 PAC:30994589 |
Low | No | 1696 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -30.183 AMFE: -0.692 GC content %: 43.632 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G142013_T03 | RepBase (RepeatMasker) | 2014-01-31 | HARBN2_ZM |