GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM2G149091 GRMZM2G149091	2	222149742	222151612	Phytozome	6a	Zea_mays	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM2G149091_T01 GRMZM2G149091_T01 PAC:30967290	High	No	1341		Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -26.674 AMFE: -0.628 GC content %: 42.506
Zmays_GRMZM2G149091_T02 GRMZM2G149091_T02 PAC:30967291	High	No	700		Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -24.471 AMFE: -0.524 GC content %: 46.714
Zmays_GRMZM2G149091_T03 GRMZM2G149091_T03 PAC:30967292	High	No	646		Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -23.700 AMFE: -0.702 GC content %: 33.746

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).