GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM2G149105 GRMZM2G149105	8	173860096	173860854	Phytozome	6a	Zea_mays	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM2G149105_T01 GRMZM2G149105_T01 PAC:30980947	High	No	647		Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -33.153 AMFE: -0.638 GC content %: 51.932
Zmays_GRMZM2G149105_T02 GRMZM2G149105_T02 PAC:30980946	High	No	656		Get ORF Coding potential... Type: noncoding Potential: -0.784 Folding energies... MFEI: -32.988 AMFE: -0.636 GC content %: 51.829
Zmays_GRMZM2G149105_T03 GRMZM2G149105_T03 PAC:30980945	High	No	668		Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -32.904 AMFE: -0.633 GC content %: 51.946

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).