Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G177458 GRMZM2G177458 |
1 | 281927473 | 281930109 | Phytozome | 6a | Zea_mays | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G177458_T01 GRMZM2G177458_T01 PAC:31013752 |
Low | No | 2483 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -28.679 AMFE: -0.596 GC content %: 48.127 | |
Zmays_GRMZM2G177458_T02 GRMZM2G177458_T02 PAC:31013753 |
High | No | 1541 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -26.697 AMFE: -0.551 GC content %: 48.475 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G177458_T01 | RepBase (RepeatMasker) | 2014-01-31 | DNA-TA-1_ZM |