GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM2G177617 GRMZM2G177617	8	63908549	63911543	Phytozome	6a	Zea_mays	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM2G177617_T01 GRMZM2G177617_T01 PAC:30982352	High	No	750		Get ORF Coding potential... Type: noncoding Potential: -1.241 Folding energies... MFEI: -22.467 AMFE: -0.624 GC content %: 36.000
Zmays_GRMZM2G177617_T02 GRMZM2G177617_T02 PAC:30982351	High	No	1658		Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -31.719 AMFE: -0.648 GC content %: 48.914

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).