Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G181148 GRMZM2G181148 |
9 | 149385992 | 149393359 | Phytozome | 6a | Zea_mays | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G181148_T03 GRMZM2G181148_T03 PAC:31043318 |
Low | No | 528 | Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -23.769 AMFE: -0.541 GC content %: 43.939 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G181148_T03 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-25_ZM | |
Zmays_GRMZM2G181148_T03 | SwissProt | 2015-06-01 | Q5RDN9 | 4.0e-4 |