Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G318799 GRMZM2G318799 |
4 | 231271963 | 231272754 | Phytozome | 6a | Zea_mays | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G318799_T01 GRMZM2G318799_T01 PAC:31047930 |
Low | Yes | 577 | Get ORF Coding potential... Type: noncoding Potential: -1.337 Folding energies... MFEI: -29.081 AMFE: -0.691 GC content %: 42.114 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G318799_T01 | Rfam | 11.0 | mir-577 | 5.4e-8 |
Zmays_GRMZM2G318799_T01 | RepBase (RepeatMasker) | 2014-01-31 | TOURIST_ZM |