GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM2G332348 GRMZM2G332348	1	254121704	254128025	Phytozome	6a	Zea_mays	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM2G332348_T01 GRMZM2G332348_T01 PAC:31009843	High	No	643		Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -20.824 AMFE: -0.598 GC content %: 34.837
Zmays_GRMZM2G332348_T03 GRMZM2G332348_T03 PAC:31009842	High	No	1657		Get ORF Coding potential... Type: noncoding Potential: -1.334 Folding energies... MFEI: -22.812 AMFE: -0.646 GC content %: 35.305

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).