Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G376919 GRMZM2G376919 |
9 | 46649839 | 46651643 | Phytozome | 6a | Zea_mays | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G376919_T01 GRMZM2G376919_T01 PAC:31037649 |
Low | No | 1805 | Get ORF Coding potential... Type: noncoding Potential: -1.366 Folding energies... MFEI: -29.117 AMFE: -0.624 GC content %: 46.648 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G376919_T01 | SwissProt | 2015-06-01 | P26567 | 1.0e-14 |
Zmays_GRMZM2G376919_T01 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy64-ZM_LTR |