Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G398357 GRMZM2G398357 |
8 | 163785086 | 163787567 | Phytozome | 6a | Zea_mays | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G398357_T01 GRMZM2G398357_T01 PAC:30976035 |
Low | No | 768 | Get ORF Coding potential... Type: noncoding Potential: -1.232 Folding energies... MFEI: -27.617 AMFE: -0.522 GC content %: 52.865 | |
Zmays_GRMZM2G398357_T02 GRMZM2G398357_T02 PAC:30976033 |
Low | No | 1288 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -28.866 AMFE: -0.587 GC content %: 49.146 | |
Zmays_GRMZM2G398357_T03 GRMZM2G398357_T03 PAC:30976032 |
Low | No | 1541 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -25.912 AMFE: -0.575 GC content %: 45.036 | |
Zmays_GRMZM2G398357_T04 GRMZM2G398357_T04 PAC:30976034 |
Low | No | 1502 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -25.885 AMFE: -0.573 GC content %: 45.206 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G398357_T01 | SwissProt | 2015-06-01 | Q9SYM4 | 6.0e-6 |
Zmays_GRMZM2G398357_T02 | SwissProt | 2015-06-01 | Q8S4Y1 | 2.0e-5 |
Zmays_GRMZM2G398357_T03 | SwissProt | 2015-06-01 | Q8S4Y1 | 5.0e-5 |
Zmays_GRMZM2G398357_T04 | SwissProt | 2015-06-01 | Q7XTG7 | 1.0e-7 |