Gene
Zmays GRMZM2G464782
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Zmays_GRMZM2G464782 GRMZM2G464782 |
1 | 277099198 | 277112609 | Phytozome | 6a | Zea_mays | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Zmays_GRMZM2G464782_T02 GRMZM2G464782_T02 PAC:31007961 |
High | No | 1493 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -24.360 AMFE: -0.667 GC content %: 36.504 | |
| Zmays_GRMZM2G464782_T03 GRMZM2G464782_T03 PAC:31007960 |
High | No | 1409 | Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -25.458 AMFE: -0.602 GC content %: 42.300 | |
| Zmays_GRMZM2G464782_T05 GRMZM2G464782_T05 PAC:31007965 |
High | No | 863 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -25.006 AMFE: -0.526 GC content %: 47.509 | |
| Zmays_GRMZM2G464782_T06 GRMZM2G464782_T06 PAC:31007964 |
High | No | 858 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -24.930 AMFE: -0.523 GC content %: 47.669 | |
| Zmays_GRMZM2G464782_T07 GRMZM2G464782_T07 PAC:31007963 |
High | No | 858 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -24.930 AMFE: -0.523 GC content %: 47.669 | |
| Zmays_GRMZM2G464782_T08 GRMZM2G464782_T08 PAC:31007962 |
High | No | 510 | Get ORF Coding potential... Type: noncoding Potential: -0.604 Folding energies... MFEI: -24.745 AMFE: -0.497 GC content %: 49.804 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
