Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM2G556522 GRMZM2G556522 |
9 | 113191569 | 113192342 | Phytozome | 6a | Zea_mays | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM2G556522_T01 GRMZM2G556522_T01 PAC:31040298 |
Low | No | 774 | Get ORF Coding potential... Type: noncoding Potential: -1.357 Folding energies... MFEI: -26.072 AMFE: -0.602 GC content %: 43.282 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM2G556522_T01 | RepBase (RepeatMasker) | 2014-01-31 | HARB3_ZM | |
Zmays_GRMZM2G556522_T01 | SwissProt | 2015-06-01 | O82497 | 8.0e-7 |