Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM5G804816 GRMZM5G804816 |
4 | 27208229 | 27210690 | Phytozome | 6a | Zea_mays | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM5G804816_T01 GRMZM5G804816_T01 PAC:31049026 |
Low | No | 1873 | Get ORF Coding potential... Type: noncoding Potential: -0.297 Folding energies... MFEI: -28.217 AMFE: -0.600 GC content %: 47.037 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM5G804816_T01 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-108_SB-I | |
Zmays_GRMZM5G804816_T01 | SwissProt | 2015-06-01 | Q2G9U8 | 8.0e-16 |