GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM5G811273 GRMZM5G811273	1	62502	64014	Phytozome	6a	Zea_mays	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM5G811273_T01 GRMZM5G811273_T01 PAC:31019186	High	No	360		Get ORF Coding potential... Type: noncoding Potential: -0.318 Folding energies... MFEI: -18.972 AMFE: -0.474 GC content %: 40.000
Zmays_GRMZM5G811273_T02 GRMZM5G811273_T02 PAC:31019187	Low	No	279		Get ORF Coding potential... Type: coding Potential: 0.133 Folding energies... MFEI: -21.864 AMFE: -0.535 GC content %: 40.860

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).