Gene

Zmays GRMZM5G842334

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Zmays_GRMZM5G842334
GRMZM5G842334
3 72875035 72875425 Phytozome 6a Zea_mays
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Zmays_GRMZM5G842334_T01
GRMZM5G842334_T01
PAC:31027931
Low No 391
Coding potential...
Type: noncoding Potential: -1.219
Folding energies...
MFEI: -15.959 AMFE: -0.473
GC content
%: 33.760


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Zmays_GRMZM5G842334_T01  SwissProt 2015-06-01 F4IN58 3.0e-6
Zmays_GRMZM5G842334_T01  RepBase (RepeatMasker) 2014-01-31 LINE1-15_SBi


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

GRMZM5G842334.png