Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Zmays_GRMZM5G854179 GRMZM5G854179 |
4 | 240701975 | 240702402 | Phytozome | 6a | Zea_mays | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Zmays_GRMZM5G854179_T01 GRMZM5G854179_T01 PAC:31045577 |
Low | Yes | 428 | Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -33.318 AMFE: -0.810 GC content %: 41.121 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Zmays_GRMZM5G854179_T01 | RepBase (RepeatMasker) | 2014-01-31 | DNA-TA-1_ZM | |
Zmays_GRMZM5G854179_T01 | Rfam | 11.0 | MIR1122 | 7.5e-15 |