GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Zmays_GRMZM5G884316 GRMZM5G884316	7	172858634	172863417	Phytozome	6a	Zea_mays	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Zmays_GRMZM5G884316_T01 GRMZM5G884316_T01 PAC:30995227	High	No	1025		Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -19.278 AMFE: -0.578 GC content %: 33.366
Zmays_GRMZM5G884316_T02 GRMZM5G884316_T02 PAC:30995226	High	No	891		Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -26.678 AMFE: -0.531 GC content %: 50.281
Zmays_GRMZM5G884316_T03 GRMZM5G884316_T03 PAC:30995225	High	No	891		Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -26.678 AMFE: -0.531 GC content %: 50.281

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).